Audio/Video not matching when converting with Videora...

I have some TV shows already on my computer that I've put through Videora to try and get on my ipod...but the audio and video is not matching up. I have checked and double checked and am defineltly using the mpeg4 format and not the H ones...this is driving me crazy...can anyone please help?!? I've searched other topics but I haven't found any thing that helps yet

the itunes doesnt play the sound but when its on the ipod it plays back fine till the last 20 mins or so.

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