Backing up an External Hard Drive using Time Machine

I have a brand new iMac 21.5" (late 2012) 3TB Time Capsule, and a 1 TB Western Digital Passport external drive. I use the Passport to share files between my iMac and MacAir.
I am using Time Machine to back up all my Apple Computers to Time Capsule.
I have formatted my Passport in Mac OS Extended Journaled, Encrypted.
I have the Passport set up to back up through Time Machine on the iMac.
It seems it backs up the entire Passport every time I hit Back up now onto the Time Capsule. But it only shows NOW as the only available revision in Time Machine.
It seems to be backing up the entire drive each time and not saving revisions. The only revision that is available is the NOW one.
I have disabled the security on the VCD portion of the Passport, it has Western Digital Software on it.
I have had the same issue with the Passport formatted in Mac OS Extended Journaled with no encryption as well. But I really need to passowrd protect the passport since I travel with it constantly in case I lose it.
Any ideas on how to get it to back up to Time Machine properly?

I backed up the iMac and Passport yesterday. It was successful. The issue seem to be incremental backups. It did not backup after my First original backup of the passport. The backups of the iMac seem to be working normal and at ever hour.
Here is a string of a Automatic backup this morning when the computer was "sleeping" with the passport connected. I did change the passport yesterday to Sleep to never before i plugged it in to my iMac using the software on my Mac Air.
12/21/12 7:46:29.454 AM com.apple.backupd[2069]: Starting automatic backup
12/21/12 7:46:29.459 AM com.apple.backupd[2069]: Attempting to mount network destination URL: afp://Brad%20Smith;AUTH=SRP@Smiley%20Blue._afpovertcp._tcp.local/Data
12/21/12 7:46:40.211 AM com.apple.backupd[2069]: Mounted network destination at mount point: /Volumes/Data using URL: afp://Brad%20Smith;AUTH=SRP@Smiley%20Blue._afpovertcp._tcp.local/Data
12/21/12 7:46:40.000 AM kernel[0]: ASP_TCP asp_tcp_usr_control: invalid kernelUseCount 0
12/21/12 7:46:40.000 AM kernel[0]: AFP_VFS afpfs_mount: /Volumes/Data, pid 2071
12/21/12 7:46:40.000 AM kernel[0]: AFP_VFS afpfs_mount : succeeded on volume 0xffffff81c8d40008 /Volumes/Data (error = 0, retval = 0)
12/21/12 7:46:51.394 AM mds[55]: (Error) Volume: Root store set to FSOnly with matching create! (loaded:1)
12/21/12 7:46:52.069 AM com.apple.backupd[2069]: Disk image /Volumes/Data/iMac Home.sparsebundle mounted at: /Volumes/Time Machine Backups
12/21/12 7:46:52.070 AM com.apple.backupd[2069]: Backing up to: /Volumes/Time Machine Backups/Backups.backupdb
12/21/12 7:46:52.904 AM com.apple.backupd[2069]: Using file event preflight for Macintosh HD
12/21/12 7:46:52.966 AM com.apple.backupd[2069]: Will copy (8 KB) from Macintosh HD
12/21/12 7:46:52.966 AM com.apple.backupd[2069]: Found 11 files (8 KB) needing backup
12/21/12 7:46:52.968 AM com.apple.backupd[2069]: 900.9 MB required (including padding), 1.77 TB available
12/21/12 7:47:03.425 AM com.apple.backupd[2069]: Copied 227 files (8 KB) from volume Macintosh HD.
12/21/12 7:47:03.437 AM com.apple.backupd[2069]: Using file event preflight for Macintosh HD
12/21/12 7:47:03.438 AM com.apple.backupd[2069]: Will copy (Zero KB) from Macintosh HD
12/21/12 7:47:03.438 AM com.apple.backupd[2069]: Found 5 files (Zero KB) needing backup
12/21/12 7:47:03.438 AM com.apple.backupd[2069]: 900.8 MB required (including padding), 1.77 TB available
12/21/12 7:47:07.789 AM com.apple.backupd[2069]: Copied 125 files (82 bytes) from volume Macintosh HD.
12/21/12 7:47:08.391 AM com.apple.backupd[2069]: Created new backup: 2012-12-21-074707
12/21/12 7:47:08.509 AM com.apple.backupd[2069]: Starting post-backup thinning
12/21/12 7:47:08.509 AM com.apple.backupd[2069]: No post-back up thinning needed: no expired backups exist
12/21/12 7:47:08.711 AM com.apple.backupd[2069]: Backup completed successfully.
12/21/12 7:47:11.153 AM com.apple.backupd[2069]: Ejected Time Machine disk image: /Volumes/Data/iMac Home.sparsebundle
12/21/12 7:47:11.000 AM kernel[0]: AFP_VFS afpfs_unmount: /Volumes/Data, flags 0, pid 2097
12/21/12 7:47:11.000 AM kernel[0]: AFP_VFS afpfs_unmount : We are the last mnt/sbmnt using volume /Volumes/Data 0xffffff81c8d40008
12/21/12 7:47:11.000 AM kernel[0]: AFP_VFS afpfs_unmount : We are the last volume using socket /Volumes/Data 0xffffff81c8d40008
12/21/12 7:47:11.609 AM com.apple.backupd[2069]: Ejected Time Machine network volume.
12/21/12 7:47:11.000 AM kernel[0]: AFP_VFS afpfs_unmount : afpfs_DoReconnect sent signal for unmount to proceed
I am currently trying to run a Manual backup. When I go into Time Machine preferences it shows it backing up. But it is incrementally increasing what needs to back up. As it backs up what needs to be backed up keep increasing. It is currently at 25 GB and increasing.
12/21/12 11:32:29.083 AM com.apple.backupd[2297]: Starting manual backup
12/21/12 11:32:29.085 AM com.apple.backupd[2297]: Network destination already mounted at: /Volumes/Data
12/21/12 11:32:30.476 AM com.apple.backupd[2297]: Disk image already attached: /Volumes/Data/iMac Home.sparsebundle, DIHLDiskImageAttach returned: 35
12/21/12 11:32:31.628 AM com.apple.backupd[2297]: Disk image /Volumes/Data/iMac Home.sparsebundle mounted at: /Volumes/Time Machine Backups
12/21/12 11:32:31.629 AM com.apple.backupd[2297]: Backing up to: /Volumes/Time Machine Backups/Backups.backupdb
12/21/12 11:32:32.748 AM com.apple.backupd[2297]: Forcing deep traversal on source: "Passport" (mount: '/Volumes/Passport' fsUUID: 953CB615-811D-34EF-A58D-6DD7A90A193B eventDBUUID: 01E640D8-2915-484E-8715-B9C29176B241)
12/21/12 11:32:36.354 AM com.apple.backupd[2297]: Deep event scan at path:/Volumes/Passport reason:must scan subdirs|require scan|
12/21/12 11:32:36.354 AM com.apple.backupd[2297]: Finished scan
12/21/12 11:32:52.530 AM System Preferences[2466]: Cannot setMachineString without first being authenticated
12/21/12 11:32:52.570 AM System Preferences[2466]: *** WARNING: -[NSImage compositeToPoint:operation:] is deprecated in MacOSX 10.8 and later. Please use -[NSImage drawAtPoint:fromRect:operation:fraction:] instead.
12/21/12 11:32:52.571 AM System Preferences[2466]: *** WARNING: -[NSImage compositeToPoint:fromRect:operation:] is deprecated in MacOSX 10.8 and later. Please use -[NSImage drawAtPoint:fromRect:operation:fraction:] instead.
12/21/12 11:32:52.573 AM System Preferences[2466]: *** WARNING: -[NSImage compositeToPoint:operation:fraction:] is deprecated in MacOSX 10.8 and later. Please use -[NSImage drawAtPoint:fromRect:operation:fraction:] instead.
12/21/12 11:32:52.574 AM System Preferences[2466]: *** WARNING: -[NSImage compositeToPoint:fromRect:operation:fraction:] is deprecated in MacOSX 10.8 and later. Please use -[NSImage drawAtPoint:fromRect:operation:fraction:] instead.
12/21/12 11:33:05.236 AM com.apple.backupd[2297]: Found 74801 files (52.7 MB) needing backup
12/21/12 11:33:05.239 AM com.apple.backupd[2297]: 964.1 MB required (including padding), 1.77 TB available
12/21/12 11:33:18.575 AM com.apple.launchd[1]: (com.apple.qtkittrustedmoviesservice[2447]) Could not terminate job: 3: No such process
This String seems to pop up a few times while it is doing this manual backup
12/21/12 11:36:30.487 AM com.apple.backupd[2297]: Disk image already attached: /Volumes/Data/iMac Home.sparsebundle, DIHLDiskImageAttach returned: 35
12/21/12 11:36:31.645 AM com.apple.backupd[2297]: Disk image /Volumes/Data/iMac Home.sparsebundle mounted at: /Volumes/Time Machine Backups
12/21/12 11:36:31.726 AM com.apple.backupd[2297]: Network destination already mounted at: /Volumes/Data
12/21/12 11:36:33.084 AM com.apple.backupd[2297]: Disk image already attached: /Volumes/Data/iMac Home.sparsebundle, DIHLDiskImageAttach returned: 35
12/21/12 11:36:34.334 AM com.apple.backupd[2297]: Disk image /Volumes/Data/iMac Home.sparsebundle mounted at: /Volumes/Time Machine Backups
12/21/12 11:36:34.411 AM com.apple.backupd[2297]: Network destination already mounted at: /Volumes/Data
It is curretnly at backing up 36.0 GB of 39.65 GB and increasing.

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    I notice you mentioned about importing there .... I've seen the .emix files you mention .... i have 30,000+ of them.
    What I find helpful in mail is that if I type a client's second name, in this case 'Lopez' I can pull up all the mails relating to him in an instant, around 450. Obviously it would be impossible to pick through 30K .emix files to find the right ones .... so could I easily import them in to my Mail on my new computer?
    Could I select the whole lot of them, then drag and drop them in to my new Mail on the new computer, and then use the search function on Mail? ... the normal desktop search function doesn't seem to look through the emix files, or emails for that matter.
    Also, just as an extra precaution, could I make a smart folder in Mail with the name of said client for example for, then archive that folder separately?
    TY
    Message was edited by: Scottishengineer

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