Backup and data transfer from old to new iphone

I recently upgraded to the iphone 5s from iphone 4 and need to backup and transfer data from old phone to the new phone.  I want to backup using itunes rather than using icloud.  Do I need to disable icloud backup on the old phone before I start the backup process.  Do I need to disable anything on my computer (icloud).  I am using Windows Vista and Itunes Version 10.7.  Would appreciate step by step instructions for backup and transfer..  I am not computer or iphone saavy and don't want to mess things up.

If you backup with iTunes and you restored from the backup and the data are gone, then there is no where to retrieve them from unless you have another backup that contains those data.
Launch iTunes on the computer and go to iTunes>Preferences>Devices. You will see a window with all of your backups listed in it.
If you see a recent backup that you are certain contains the data that you need, recover deleted data from iPhone backup.
If your note is gone from iCloud.com there is only a few ways to possibly recover it.
The first things I would check is a iCloud Backup, a iTunes Backup, or a 3rd party email that may have contained the note. To restore from a iCloud or iTunes backup follow this link. This article explains how to restore a device from either back up.
Note if you have backed up since the note went missing, you will not have the note on the backup. Make sure you do not back up if trying to restore from a back up as this will back up the content without the note.
To get to the "Set up assistant" on an iOS device, you must go to Settings>General>Reset>Erase All Content and Settings. Once the phone restarts, you will be at the "Set up Assistant"

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