Backup Applications Folder, too?

I'm good about backing up. Usually just drag the USERS folder over to my LaCie, and let it do it's thing. (The other day I tried EXT HD software's, which basically did the same thing.)
But I wonder, why can't I easily also back up my Applications Folder? Wouldn't that make sense, too? Of course, I'm sure I could drag it over to my External Hard Drive and let it copy that, too. What's the thinking on this? Thanks.

Wow man... that was a great post!
I dl'd and ran Applejack and it found a lot of things. I wasn't sure if I was supposed to wack my user cache and prefs or not, but I did anyway. I figure it couldn't hurt. Since the user acct is what has the most action, I thought that perhaps that might be where some of the problem is.
Also, I think I understand backing up now with superduper or anything else. Correct me if I'm wrong, but I think what you are saying is that if I clone my current hard drive to another drive (I have a FW drive I can use, instead of USB), that is basically takes all the info on my current drive, and copy's it all to another location, except in a nice and neat order? If it's copying the drive, how does it know what's in or out of order, and what is perhaps not right? In my mind, cloning something doesn't mean making improvements. But perhaps you're saying that it takes all those system files, and puts them in a nice neat arrangement, rather than spread out across the disk. If that is the case, then I can understand that.
I guess I still don't understand why I should clone my current HD? What do I do with the old? Totally wipe it and start over with a fresh install? So then what do I do with the clone? Take things of my choosing, like applications and their pref's and move it over to the new install? That way I don't have to reinstall certain things?
And once I do this, what should I do with that clone? Overwrite it with the nice new reinstall of my OS, along with the app's that I want? And from there, use that clone as my guinnea pig for things before installing them for real? I like that idea.
So, if I install an OS to a FW drive, and boot to it, I can run that OS no problem, and any application on it. Let me ask you this... since I run an iMac, what if my internal HD started to fail? In theory, could I run my OS from the FW indefinitely? Would it be just as fast? Slower? Not a good idea? Just curious.
FWIW, I have Cocktail, TTP, and Disk Warrior, and I have ran them on this machine regularly. I actually figured that maybe TTP actually screwed something up, which is why I wanted to wipe and start over.
The reason why I think something is weird, is because very little will cause my CPU to max out. I dl'd and installed an update to Webkit, and my CPU MAXED while dl'ing and installing it. You can imagine how slow my machine gets when I run something that is really CPU intensive like an Audio application for recording. It's beach ball central, and so sluggish that I can't stand using it. I even added another 2gigs of ram, to max myself out at 2.5 (I have 3gigs installed, but this machine will only recognize 2.5), and it didn't really seem to improve by much.
At my office I use a 2.33 Core Duo iMac G5, and that thing is always fast. Granted, it's supposed to be MUCH faster than this machine. But even so, this machine shouldn't be all THAT frustrating to use should it? It's not far off from one of the older Mini's. Stink-o! I bought it new, and it's still covered under Applecare. But I'm not sure why I would want to take it in? It's a refurb from Apple. And ever since I bought it, I noticed that they musta had the machine apart at one time, and they wiped the inside of the monitor off, and left dark streaks!! I can't clean it off without taking the machine apart, which I'm not going to do. So, right there is a reason to take it to Apple. So they can fix that, and maybe run it thru it's paces. I don't know. I need to do that before my Applecare runs out. I'm wanting to sell this machine soon, so I can get a faster Intel machine, and I don't want to sell it with these streaks, even though you really don't see them unless yer on a white background.
Oh, one more thing, when I booted to Single User mode to run Applejack, my machine had all it's fans CRANKING, and for at least 20 min. The fans stopped immediately when I selected to fix my pref's, and before I hit enter. Isn't that strange? Also, the log on my screen, when I logged in to Single User Mode, indicated strange things that appeared to be "problems" with certain things. I took a pic with my phone, and can send them to you if you want to see.
Thanks for the help! Sorry this is so wordy!
J

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