Bad estimate of iPad available memory during iTunes Sync

All my music is in apple lossless format. When synchronizing with iTunes , I check the option to convert to 128 kbps. iTunes does the conversion however the available memory estimate is done using the full size of lossless format. As a result my iPad is half empty since Itunes believe it is full and refuse to synchronize more stuff.
I did have this issue with earlier versions of iTunes (9.x).
I went to a genius bar, but they had no clues...

Bad wording, I didn't have this issue with iTunes 9.x, but have it with iTunes 10.x and 11.x

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