Bad quicktime playback

I recently imported a video to my hard drive using MacTheRipper. I wanted it to be in .mov format so I ran it through MPEG StreamClip 1.3.1 (With the box checked to "fix streams with data breaks"). This took about 20 hr to do and my end result is footage that "lurches" along (stops & starts every few seconds). Is there a way to fix this or do I have to start all over again?---hope not! Under Stream Clip "Export to Quicktime" (Movie Exporter) I selected 720x480 NV-NTSC (frame rate) and 100% Quality. Reinterlace Chroma & Zoom (100%) were set by default.
Also: When I selected the files I highlighted them all. I just went back and tried choosing the first file and was give the option to "Fix time Code Breaks". This option didn't appear when selecting all the files.
Any ideas?

Arghhh... Finally realised it's the settings for my Display in System Preferences. For some peculiar reason after the Quicktime update it was reset to "colours : Thousands" instead of "colours : MIllions"

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