Batchjobs are not scheduled automatically.

Hello SAP-Guru's,
I have following situtation: There are a few customer specific programms which are executed in production system, which locks thousands of materials at a time(I know that the programms should be corrected) and due to this we have an overflow of Locktable and due to this we have problem that our batch jobs which are scheduled are unplanned autmatically doesn't run anymore and the jobs which are running are aborted and run anymore. We have atleast above 1000 Jobs, we have to schedule them each and everytime manually, it is really messing us.
As far as I know this is an SAP Problem.
My Question is: Is there any remedy or OSS or Patches which can be implemented and prevents the above situation.
Cheers
Sanjeev

Hi Udayan,
We went back to original state of just 4 jobs, now just one job is running and still 3 other jobs are idle.
I am sure that jobs did not run, scheduler entry is EMPTY, Next run time is seen but it doesn't actually run at that time.
ADDITIONAL INFORMATION:
When I compare J2EE Engine Open alerts and logs of working instance with the other instance which is not working properly this is what I found.
1)       Used Memory Rate u2013 94% > 80% which is above threshold.
2)       Waiting Tasks Count u2013 2 > 0 which is above threshold.
3)       Log File Size u2013 above threshold.
When I restart the J2EE engine, this instance doesn't restart immediately, it says some processes are not running because of these open alerts.
has anybody come across such a situation in the past?

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