Best HD Upgrade Strategy?

I have a MacPro ("Early 2008") 2.8 GHz Quad Core 45-nm Intel Xeon E5462 2008 with 8GB RAM. I am running it as an office server with Mountain Lion Server. Two years ago I upgraded the two harddrives to 3TB each ... but at the time, did not install the RAID. I use a utiltiy to clone one drive every week or so (for "back-up"). I now have more than 2.2TB on the drive (cloned when I do the back-up) ... including files and system, etc.
I would really like to increase my storage space to last a while and reinstall the RAID. Two 6TB drives would be great.
Questions: Best hardware options for this? Other recommendations (SSD for system)? What is a specific process for migrating to new config (i.e. to re-establish RAID, keep users, preferences, permissions, etc.
Alot of info, I know. I appreciate the advcie/help.

Avoid the Apple hardware RAID card. For one thing it does not support 2.5TB and up.
Want to stay iwth mirroring, look at SoftRAID.com 
Of course SSD is fine for system.
Seagate Enterprise drives for RAID, NAS or software arrays.
Seagate ST1000NM0033 Enterprise Constellation ES.3
http://www.amazon.com/gp/product/B00A47FPL8/
SSD: Samsung 840 EVO 128GB
http://www.amazon.com/Samsung-Electronics-2-5-Inch-Internal-MZ-7TE120BW/dp/B00E3 W15P0/
One issue with 3TB, often those are 'green' not 7200 rpm and not suited to arrays, let alone hardware RAID.

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