Best strategy to deal with Compilations folder

Hello,
I just moved my music folder to an external USB drive and I went back into preferences and used the Advanced tab to change the location of the folder. iTunes worked for a while and it produced 263 folders in the Compilations folder full of single song folders.
Now I can attest to the fact that I always checked not part of a compilation checkbox and stated No in the drop down, each and every time I ripped a CD.
How do I revert all of these songs in the folders that they belong into?
Thanks for any help.
Wassim

AskTom has a good article about this,
http://asktom.oracle.com/tkyte/Mutate/index.html

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