Best way to restore iTunes contents on new computer.

The computer gods conspired to get me.  My Windows XP desktop failed beyond repair and I am getting a new Windows 7 desktop.  But also by some coincidence, my new external hard drive that I backup my system on weekly also failed.  I still have my previous external hard drive, however.  The last backup from that was the beginning of June. 
So I am looking for the best way to get whole again.  I have NO downloaded music on the iPod (some music from CDs that I can reload).  I do have a number of apps however, some with a lot of data that would be difficult to replace (although updating from June would be doable).
If after installing iTunes on the new computer,I just synced to the iPod what would I lose?  Would it keep the apps data on the iPod?
Or should I install iTunes, copy my backup from my External drive to the new computer and restore from the backup?
Thanks

- Transfer iTunes purchases by:
iTunes Store: Transferring purchases from your iPhone, iPad, or iPod to a computer
- Transfer other music by using a third-party program lke those discussed here:
Best iPod to PC
- Making a backup of the iPod by connecting the iPod to the computer and right clicking on the iPod under Devices in iTunes and selecing Backup
- Restore the iPod from backup and sync as necessary.

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