Big trouble moving Archived Canon 5D/7D footage.

Hi All,
here i'm with big trouble batch capturing an huge quantity of footage.
Here the worklow:
All the footage has been log and trasfered in ProRes Proxy.
At end of editing, I'd like to take all the clip in Prores HQ.
I've created an offline version and the moved to another system.
Here the troubles. Many of the cards are not readable and even when I read it, Final cut
tell me that nothing is ready. The incredible thing is that if I do the same thing on the original system
it works great! Any idea is very well Accepted! Please help me!
Many thanks in advance! Best Regards
Paul

If you transcoded to ProRes you shouldn't be waiting hours for an export.  Unless your timeline is hours in duration.  As you're working at a post house you probably know all of this, but here are a couple of tips I can think of right now that could speed things up:
1) Only one frame rate on a timeline.
2) Minimize the number of filters on a clip.
3) Export to a drive that is not the drive your media is on.  Perhaps you have a media drive and a completed projects drive.  Of course both should be internal SATA, eSATA, Firewire, Lightpeak, or perhaps a proprietary connection to a RAID card.  No USB.  If you aren't needing to have a lot of data on your media drive or your export drive consider a faster (but smaller) solid state drive.
4) Use the Batch Export function.  Queue everything up and have Final Cut exporting a few sequences during lunch or when you leave at night.
5) Make sure autorender is on.  Leave Final Cut open at night and it will autorender all open sequences.  If you have several filters on your clips the computer will work on it overnight and you'll come in to a rendered sequence that should export very quickly.

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