Bizarre App "de-selection" Problem - Any idea?

Ok... This is strange enough that I am at a total loss. This literally just started happening this morning for no apparent reason. Basically what's going on is that when I am in an app, like safari or pages, or anything, after about 30 seconds of using the current window everything up top will grey out and the cursor will disappear as if I am switching to another app or something. I have to replace my cursor and continue typing (like I've had to do 3 times up to this point right here). There is nothing else open to be switched to so it really doesn't make any sense... Does anyone have any idea what might be happening? Need any more information? Thank you.

Reformatted... Re-installed OSX SL... Just restored backed up files individually, carefully checking permissions. Problem solved. Works fine. Seems to be the only solution.

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