Black lower field in .avi when converting to any format

Dear Masters out there:
Trying to convert old .avi-clips that plays taller than wider in Windows Player (Parallels)for some reason, but when trying to convert (tried them all: Prism, MPEG Streamclip, Handbrake, FlipMac, etc...) to Mp4 (or rather: to an FCE-compatible sequence) the video plays upper field but is black lower field? I´m sure this is just me not thinking straight, but it has been a few days now... Please explain the solution to me like I was a six year old. I´m really eight!
William, Lapland, Sweden

Windows version is here:
http://www.squared5.com/svideo/mpeg-streamclip-win.html

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