Blue render lines won't disappear

Hey guys,
The main issue is transitions, speed and filters refusing to render properly. They do 'render', however, once the footage is played back it is very pixelated at the points where i have added transitions or adjusted speed etc. I am working with .mov files. I have individually ticked all the boxes from the sequence menu and exported it to its final destination and it still looks the same.
Hope someone can help,
All the best,
Des

You can't really use MPEG 4 in Final Cut Pro without loads of hassle. It is not a supported editing format.
Where does the source material come from?
If it is from a camera, you would typically use the Log and transfer window to bring in your footage and transcode to ProRes or Apple Intermediate codec.
If the files came from elsewhere, you would use Compressor to convert them to a format such as those listed in the FCP Easy Setup menu.

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