Bookmarks synced, not showing in Safari

Hi. I bought a Macbook Air today and am trying to set up Safari. I have an iPad 2 and an iPhone 4S and the bookmarks from them should sync perfectly to the Macbook, but...there are issues. They synced, since, when I hit "Show All Bookmarks" in Safari, it shows they are on the notebook, but they don't show when I click Bookmarks from the menu at the top of Safari, which is where they're needed and conveinient. What am I doing wrong? Thanks
PS - I'm in the process of downloading Mountain Lion for it, but figure this might be an issue for 10.7.4 as much as 10.8.1, yet wanted to note that, too.

First, congratulations on your new MacBook Air! I hope you enjoy it.
Here's an informative article on the subject you address. Note (from the article) more is coming once iOS 6 comes out this fall. I believe that includes the feature you're asking about.
http://support.apple.com/kb/HT5364

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I have some bookmarks that I've added to Safari on the iPod that don't show up on the Mac after a sync and a few that I've added to Safari on the Mac that don't show up on the iPod after a sync.
I've tried everything (reset sync history in iSync, stop syncing bookmarks via the checkbox in iTunes and then syncing again, etc.) short of a restore on the iPod. I want to know if there is anything else I can try before I restore the iPod because I don't want to loose the bookmarks that I've added to the iPod.
Anybody have any ideas/suggestions? Is there a way to backup the bookmarks on the iPod so that I can then re-import them into Safari on the Mac after a reset if I have to?
TIA

Can't help with your bidirectional bookmark syncing question but try this for backing up your touch's bookmarks.
Export/backup all of your Safari/Internet Explorer bookmarks (depending on where you're syncing them from) and keep them is a safe place. This is your master bookmarks list. Then delete all bookmarks/folders from your browser. Now sync your bookmarks with the touch with the following iTunes settings:
Under your touch's 'Info' tab, select the checkbox 'Sync bookmarks with Internet Explorer/Safari'.
After syncing, your touch's bookmarks (and only those from your touch) will be synced to your browser. Now export/backup these bookmarks...these are your touch's bookmarks. Now you have a both a backup of your master bookmarks and your touch's bookmarks. When you want to sync/restore your touch's bookmarks back to the touch, delete all your PC browser's bookmarks and import the touch bookmarks:
Under iTunes/your touch/'Info'/Web browser & Advanaced, select the checkboxes 'sync bookmarks with IE/Safari' and 'Replace information on this iPod: Bookmarks' and sync again.
This will transfer your touch's bookmarks back to the touch. Now delete all bookmarks again from IE/Safari and re-import your master bookmarks. Note that after importing them back in, they will likely be in alphabetical order rather than the date added order.
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