Books in iBooks not being removed after syncing

Although I use iCloud, I do back up and sync music, photos, movies, and books to iTunes on my Mac. I just purchased another book on iTunes, connected to iTunes for back up and loading the new book onto the iPad. I also unchecked some books that I no longer want on the iPad and applied the changes.
The old books, or at least their images, remain on the iPad's iBook shelves.
What am I doing wrong?


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