Boot Camp partition missing, VMware Fusion not working

I'm using OS 10.10.2
Windows 7
Fusion 7.1.0
Winclone 3.7
I've been sharing a boot camp partition with Fusion for a while. I don't know when it happened but when I recently tried to log in using Boot Camp, the partition didn't show up in Apple's start up screen or in the Finder even though I could see it in Fusion.
I needed to expand the partition so I backed it up with Winclone changed the partition from 40 to 75 gig and reinstalled the Winclone file.
Now I'm unable to boot into Windows using Fusion and I still can't see the Boot Camp partition when I start up.
Fusion said
so I did.
The new virtual machine said
and
Now it wants me to upgrade Windows.
Please help.

I saw R.NTFS so I started on the Windows DVD and ran Repair.
Unfortunately I still can't get Boot Camp to do anything beside give me a flashing cursor on a black screen.
What else can I do?
This is from the terminal screen after I did everything above. It still says R.NTFS
Last login: Sat Mar 14 01:30:47 on console
Bruces-MPB:~ bruce$ sudo dd if=/dev/rdisk0s4 count=1 2>/dev/null | hexdump -C
Password:
00000000  eb 52 90 4e 54 46 53 20  20 20 20 00 02 08 00 00  |.R.NTFS    .....|
00000010  00 00 00 00 00 f8 00 00  3f 00 ff 00 00 58 c8 6f  |........?....X.o|
00000020  00 00 00 00 80 00 80 00  ff 0f a8 04 00 00 00 00  |................|
00000030  00 00 0c 00 00 00 00 00  02 00 00 00 00 00 00 00  |................|
00000040  f6 00 00 00 01 00 00 00  c9 3e 83 34 55 83 34 4e  |.........>.4U.4N|
00000050  00 00 00 00 fa 33 c0 8e  d0 bc 00 7c fb 68 c0 07  |.....3.....|.h..|
00000060  1f 1e 68 66 00 cb 88 16  0e 00 66 81 3e 03 00 4e  |..hf......f.>..N|
00000070  54 46 53 75 15 b4 41 bb  aa 55 cd 13 72 0c 81 fb  |TFSu..A..U..r...|
00000080  55 aa 75 06 f7 c1 01 00  75 03 e9 dd 00 1e 83 ec  |U.u.....u.......|
00000090  18 68 1a 00 b4 48 8a 16  0e 00 8b f4 16 1f cd 13  |.h...H..........|
000000a0  9f 83 c4 18 9e 58 1f 72  e1 3b 06 0b 00 75 db a3  |.....X.r.;...u..|
000000b0  0f 00 c1 2e 0f 00 04 1e  5a 33 db b9 00 20 2b c8  |........Z3... +.|
000000c0  66 ff 06 11 00 03 16 0f  00 8e c2 ff 06 16 00 e8  |f...............|
000000d0  4b 00 2b c8 77 ef b8 00  bb cd 1a 66 23 c0 75 2d  |K.+.w......f#.u-|
000000e0  66 81 fb 54 43 50 41 75  24 81 f9 02 01 72 1e 16  |f..TCPAu$....r..|
000000f0  68 07 bb 16 68 70 0e 16  68 09 00 66 53 66 53 66  |h...hp..h..fSfSf|
00000100  55 16 16 16 68 b8 01 66  61 0e 07 cd 1a 33 c0 bf  |U...h..fa....3..|
00000110  28 10 b9 d8 0f fc f3 aa  e9 5f 01 90 90 66 60 1e  |(........_...f`.|
00000120  06 66 a1 11 00 66 03 06  1c 00 1e 66 68 00 00 00  |.f...f.....fh...|
00000130  00 66 50 06 53 68 01 00  68 10 00 b4 42 8a 16 0e  |.fP.Sh..h...B...|
00000140  00 16 1f 8b f4 cd 13 66  59 5b 5a 66 59 66 59 1f  |.......fY[ZfYfY.|
00000150  0f 82 16 00 66 ff 06 11  00 03 16 0f 00 8e c2 ff  |....f...........|
00000160  0e 16 00 75 bc 07 1f 66  61 c3 a0 f8 01 e8 09 00  |...u...fa.......|
00000170  a0 fb 01 e8 03 00 f4 eb  fd b4 01 8b f0 ac 3c 00  |..............<.|
00000180  74 09 b4 0e bb 07 00 cd  10 eb f2 c3 0d 0a 41 20  |t.............A |
00000190  64 69 73 6b 20 72 65 61  64 20 65 72 72 6f 72 20  |disk read error |
000001a0  6f 63 63 75 72 72 65 64  00 0d 0a 42 4f 4f 54 4d  |occurred...BOOTM|
000001b0  47 52 20 69 73 20 6d 69  73 73 69 6e 67 00 0d 0a  |GR is missing...|
000001c0  42 4f 4f 54 4d 47 52 20  69 73 20 63 6f 6d 70 72  |BOOTMGR is compr|
000001d0  65 73 73 65 64 00 0d 0a  50 72 65 73 73 20 43 74  |essed...Press Ct|
000001e0  72 6c 2b 41 6c 74 2b 44  65 6c 20 74 6f 20 72 65  |rl+Alt+Del to re|
000001f0  73 74 61 72 74 0d 0a 00  8c a9 be d6 00 00 55 aa  |start.........U.|
00000200
Bruces-MPB:~ bruce$

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    Now, Windows boots to a black screen telling me that it can't find a bootable device. I have tried a few things to resolve this, all without effect:
    I know that VMware Fusion has to prepare a boot camp partition in order to virtualize it, so I figured it might inadvertently fix things. Alas, while it *did* successfully boot my boot camp partition into a virtual machine, I still can't boot into Windows.
    I figured I'd just try to reinstall Windows. Surprisingly, my system booted to my Windows install disc, which was in my original optical drive (which I had put in a USB case). But, Windows refused to install, giving me a an error 0x8030024. It seems the solution to this issue is to disconnect all drives but the one on which you want to install Windows, which is something I would dearly like to avoid. It would be a pain, but more than that, I'm afraid it would bork my fusion drive, even if I'm careful to never boot to OS X with the SSD disconnected.
    A lot of places said that this error results from a borked MBR, and suggest using a tool like gptfdisk to rewrite it. I followed the instructions [here](https://discussions.apple.com/thread/4144252?start=0&tstart=0), but *that* didn't work either.
    I am now completely at a loss as to how to proceed, and Google isn't much help either.
    In conclusion, here is some information that you may find helpful:
        $ diskutil list
    /dev/disk0
       #:                       TYPE NAME                    SIZE       IDENTIFIER
       0:      GUID_partition_scheme                        *240.1 GB   disk0
       1:                        EFI                         209.7 MB   disk0s1
       2:          Apple_CoreStorage                         239.7 GB   disk0s2
       3:                 Apple_Boot Boot OS X               134.2 MB   disk0s3
    /dev/disk1
       #:                       TYPE NAME                    SIZE       IDENTIFIER
       0:      GUID_partition_scheme                        *750.2 GB   disk1
       1:                        EFI                         209.7 MB   disk1s1
       2:          Apple_CoreStorage                         648.4 GB   disk1s2
       3:                 Apple_Boot Boot OS X               650.0 MB   disk1s3
       4:       Microsoft Basic Data BOOTCAMP                100.9 GB   disk1s4
    /dev/disk2
       #:                       TYPE NAME                    SIZE       IDENTIFIER
       0:                  Apple_HFS Mayfly                 *884.0 GB   disk2
    $ diskutil cs list
    CoreStorage logical volume groups (1 found)
    |
    +-- Logical Volume Group 63DC419F-1A09-4C5B-977A-F59F79502CA1
       =========================================================
       Name:         FusionDrive
       Size:         888087773184 B (888.1 GB)
       Free Space:   0 B (0 B)
       |
       +-< Physical Volume B1B14251-2DB3-491C-9E7A-5C2FD11881BA
       |   ----------------------------------------------------
       |   Index:    0
       |   Disk:     disk0s2
       |   Status:   Online
       |   Size:     239713435648 B (239.7 GB)
       |
       +-< Physical Volume D0BA2837-514D-4620-8E1D-26D18137CA94
       |   ----------------------------------------------------
       |   Index:    1
       |   Disk:     disk1s2
       |   Status:   Online
       |   Size:     648374337536 B (648.4 GB)
       |
       +-> Logical Volume Family 736A8900-FE9C-4342-A932-EDC35444774C
           Encryption Status:       Unlocked
           Encryption Type:         None
           Conversion Status:       NoConversion
           Conversion Direction:    -none-
           Has Encrypted Extents:   No
           Fully Secure:            No
           Passphrase Required:     No
           |
           +-> Logical Volume B4997853-59F8-4480-BB48-3481B2F2A123
               Disk:               disk2
               Status:             Online
               Size (Total):       884000030720 B (884.0 GB)
               Size (Converted):   -none-
               Revertible:         No
               LV Name:            Mayfly
               Volume Name:        Mayfly
               Content Hint:       Apple_HFS
    $  sudo gpt -r -vv show disk1
    Password:
    gpt show: disk1: mediasize=750156374016; sectorsize=512; blocks=1465149168
    gpt show: disk1: Suspicious MBR at sector 0
    gpt show: disk1: Pri GPT at sector 1
    gpt show: disk1: Sec GPT at sector 1465149167
          start        size  index  contents
              0           1         MBR
              1           1         Pri GPT header
              2          32         Pri GPT table
             34           6        
             40      409600      1  GPT part - C12A7328-F81F-11D2-BA4B-00A0C93EC93B
         409640  1266356128      2  GPT part - 53746F72-6167-11AA-AA11-00306543ECAC
    1266765768     1269536      3  GPT part - 426F6F74-0000-11AA-AA11-00306543ECAC
    1268035304         280        
    1268035584   197111808      4  GPT part - EBD0A0A2-B9E5-4433-87C0-68B6B72699C7
    1465147392        1743        
    1465149135          32         Sec GPT table
    1465149167           1         Sec GPT header
    $ sudo fdisk /dev/disk1
    Disk: /dev/disk1     geometry: 91201/255/63 [1465149168 sectors]
    Signature: 0xAA55
             Starting       Ending
    #: id  cyl  hd sec -  cyl  hd sec [     start -       size]
    1: EE    0   0   2 - 1023 254  63 [         1 - 1268035583]     *2: 07 1023 254  63 - 1023 254  63 [1268035584 -  197111808] HPFS/QNX/AUX
    3: 00    0   0   0 -    0   0   0 [         0 -          0] unused     
    4: 00    0   0   0 -    0   0   0 [         0 -          0] unused

    My setup is very similar to your's, Ryan, on a Mac Mini5,2 and the ordering is different and Winclone was not used.
    1. New Mini with internal 500GB with Mountain Lion(ML), put into an external FW enclosure, so the Mini can/could be booted using an external drive for contigency.
    2. Replaced internal stock HDD (500Gb/5400rpm) with SSD/HDD (256Gb SSD/1TB 5400rpm).
    3. Installed W7 x64 on 64GB partition on HDD, which was a single-partition drive to begin with.
    4. The remaining HDD partition and the entire SSD was put into a Fusion drive.
    5. Using Command-R, new ML installed on Fusion HD.
    Here is what I currently have...(Disk0 - SSD, Disk1- 1TB HDD, Disk2 - Fusion, Disk3 - External FW).
    diskutil list
    /dev/disk0
       #:                       TYPE NAME                    SIZE       IDENTIFIER
       0:      GUID_partition_scheme                        *256.1 GB   disk0
       1:                        EFI                         209.7 MB   disk0s1
       2:          Apple_CoreStorage                         255.7 GB   disk0s2
       3:                 Apple_Boot Boot OS X               134.2 MB   disk0s3
    /dev/disk1
       #:                       TYPE NAME                    SIZE       IDENTIFIER
       0:      GUID_partition_scheme                        *1.0 TB     disk1
       1:                        EFI                         209.7 MB   disk1s1
       2:          Apple_CoreStorage                         934.5 GB   disk1s2
       3:                 Apple_Boot Boot OS X               650.0 MB   disk1s3
       4:       Microsoft Basic Data BOOTCAMP                64.9 GB    disk1s4
    /dev/disk2
       #:                       TYPE NAME                    SIZE       IDENTIFIER
       0:                  Apple_HFS Fusion HD              *1.2 TB     disk2
    /dev/disk3
       #:                       TYPE NAME                    SIZE       IDENTIFIER
       0:      GUID_partition_scheme                        *500.1 GB   disk3
       1:                        EFI                         209.7 MB   disk3s1
       2:                  Apple_HFS Rescue HD               371.8 GB   disk3s2
       3:                  Apple_HFS Leopard HD              31.9 GB    disk3s3
       4:                  Apple_HFS Snow Leopard HD         31.9 GB    disk3s4
       5:                  Apple_HFS Lion HD                 31.3 GB    disk3s5
       6:                 Apple_Boot Lion Recovery HD        650.0 MB   disk3s6
       7:                  Apple_HFS Mountain Lion HD        31.3 GB    disk3s7
       8:                 Apple_Boot Mountain Lion Recove... 650.0 MB   disk3s8
    diskutil cs list
    CoreStorage logical volume groups (1 found)
    |
    +-- Logical Volume Group A8C00490-0E14-401F-AB69-59F37724E8C4
        =========================================================
        Name:         Fusion
        Size:         1190201270272 B (1.2 TB)
        Free Space:   0 B (0 B)
        |
        +-< Physical Volume 4772013B-5520-4801-9BE5-BCAEF4AEDAB3
        |   ----------------------------------------------------
        |   Index:    0
        |   Disk:     disk0s2
        |   Status:   Online
        |   Size:     255716540416 B (255.7 GB)
        |
        +-< Physical Volume A679A101-3C78-4A59-B5EE-A4339210CFAD
        |   ----------------------------------------------------
        |   Index:    1
        |   Disk:     disk1s2
        |   Status:   Online
        |   Size:     934484729856 B (934.5 GB)
        |
        +-> Logical Volume Family 5EF5C7CA-0B9C-4169-82A1-41C84F206672
            Encryption Status:       Unlocked
            Encryption Type:         None
            Conversion Status:       NoConversion
            Conversion Direction:    -none-
            Has Encrypted Extents:   No
            Fully Secure:            No
            Passphrase Required:     No
            |
            +-> Logical Volume 1512657C-ED13-4B31-82C6-7AECBBCA7F98
                Disk:               disk2
                Status:             Online
                Size (Total):       1185508581376 B (1.2 TB)
                Size (Converted):   -none-
                Revertible:         No
                LV Name:            Fusion HD
                Volume Name:        Fusion HD
                Content Hint:       Apple_HFS
    sudo gpt -r -vv show disk1
    gpt show: disk1: mediasize=1000204886016; sectorsize=512; blocks=1953525168
    gpt show: disk1: Suspicious MBR at sector 0
    gpt show: disk1: Pri GPT at sector 1
    gpt show: disk1: Sec GPT at sector 1953525167
           start        size  index  contents
               0           1         MBR
               1           1         Pri GPT header
               2          32         Pri GPT table
              34           6        
              40      409600      1  GPT part - C12A7328-F81F-11D2-BA4B-00A0C93EC93B
          409640  1825165488      2  GPT part - 53746F72-6167-11AA-AA11-00306543ECAC
      1825575128     1269544      3  GPT part - 426F6F74-0000-11AA-AA11-00306543ECAC
      1826844672   126679040      4  GPT part - EBD0A0A2-B9E5-4433-87C0-68B6B72699C7
      1953523712        1423        
      1953525135          32         Sec GPT table
      1953525167           1         Sec GPT header

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