Boot times vary extremely after SSD install on a Macbook 6,1

I have a white unibody Macbook (Macbook6,1), which is factory-built-to-order except for the following components that I installed yesterday:
- 8 GB (2x 4GB) DDR2 RAM from OWC
- OCZ Octane SATA 2.0 256 GB SSD Drive
I have a 100% clean install of OS X Snow Leopard, and all the updates have been performed.
The problem I have is the following: extremely long boot times, but only when booting after a full shutdown.
For example, during the update-restarts the computer re-booted extremely fast (as expected from an SSD).
Also, re-booting after OS X install was fast. When selecting restart from the OS, and watching the restart process, it boots very, very fast.
It's only when I'm starting up from a full shutdown that it seems like I have to wait forever, and by forever I really mean the "gear" is turning over 10 minutes (never bothered to time it, it's very, very long). It's even longer than a 'safe mode' boot (which, in my experiences, performs normally).
Does anyone have any idea what the problem could be here? I've read lots of other posts, but don't really see a similar pattern...
(I've also tried the "system preferences"-"select startup disk" item, but that doesn't help, also because the only disk in the system is the SSD...)
Thanks guys!!!

The drive worked fine booting from an external enclosure as well.
Below from a non-boot (hang) during startup:
Got boot device = IOService:/AppleACPIP...
BSD root: disk0s2, major 14, minor 2
Bug: launchctl.c:3557 (23930):6 ioctl(s6, SIOCAIFADDR_IN6, &ifra6) != -1
Running fsck on the boot volume...
Executing fsck_hfs (version diskdev_cmds-491.6~3).
launchctl: Please convert the following to launchd: /etc/mach_init.d/dashboardadvisoryd.plist
AppleAHCIDiskQueueManager::setPowerState(0xceb1b00, 2 -> 1) timed out after 100107 ms
When it boots slow, it hangs a bit on 'executing' and 'launchctl', but I didn't get a "timed out" before.
I just re-booted again and now I get this:
Got boot device = IOService:/Apple....
BSD root: disk0s2, major 14, minor 2
..and then it went very fast and I saw something like "fsck not needed because volume is journaled", and the desktop appeard instantly after.
Does anyone have any ideas why I'm getting such different booting patterns?

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Hello and thank you for participating in this discussion,
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SATA connector 1 (where by default the optical drive is attached to):
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Heres the Gist,
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It's SMC > Intel-based Macs: Resetting the System Management Controller (SMC)
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1. Shut down the computer.
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Same problem here, so I'll pull this post up. No key works.
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Message was edited by: Nordlaser

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Hello
I have an iMac mid 2011 21,5". I decided to boost it a little and that's when my issues started. Got no big problem to remove the optical drive, replace it with an SSD & add few gigs of RAM, but when I started to install windows 8.1 pro with bootcamp on the SSD, and keep the old HDD with MAC OSX I faced big issues.... (basically black screen with underscore blinking top left)
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I stopped everything, removed again the optidrive, and then but back the old hdd (for Fan issue + space matter) and put back the SSD at Optidrive space.
and then rebooted... and faced something unexpected.
At boot, I have again the blackscreen with underscore blinking...
If I press ALT at boot, I can choose Mac OSX that boots well and properly. But if I select my SSD with Windows detected, I have the black screen.
I wonder if everything is lost, or if it's just something to repair in the boot sequence...
I have to admit that this is way above my skills
if someone can help me, I made some sudo commands in yosemite, to share here and eventually find a solution...
diskutil list
/dev/disk0
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:      GUID_partition_scheme                        *500.1 GB   disk0
   1:                        EFI EFI                     209.7 MB   disk0s1
   2:                  Apple_HFS Mac OS X                59.6 GB    disk0s2
   3:                 Apple_Boot Recovery HD             650.0 MB   disk0s3
/dev/disk1
   #:                       TYPE NAME                    SIZE       IDENTIFIER
   0:      GUID_partition_scheme                        *128.0 GB   disk1
   1:                        EFI EFI                     209.7 MB   disk1s1
   2:       Microsoft Basic Data BOOTCAMP                127.8 GB   disk1s2
diskutil cs list No CoreStorage logical volume groups found
sudo gpt -vv -r show /dev/disk0 gpt show: /dev/disk0: mediasize=500107862016; sectorsize=512; blocks=976773168 gpt show: /dev/disk0: PMBR at sector 0 gpt show: /dev/disk0: Pri GPT at sector 1 gpt show: /dev/disk0: Sec GPT at sector 976773167
      start       size index contents
          0          1 PMBR
          1          1         Pri GPT header
          2         32         Pri GPT table
         34          6
         40     409600 1 GPT part - C12A7328-F81F-11D2-BA4B-00A0C93EC93B
     409640 116448792 2 GPT part - 48465300-0000-11AA-AA11-00306543ECAC
116858432    1269536 3 GPT part - 426F6F74-0000-11AA-AA11-00306543ECAC
118127968 858645167
976773135         32         Sec GPT table
976773167          1         Sec GPT header
sudo gpt -vv -r show /dev/disk1 gpt show: /dev/disk1: mediasize=128035676160; sectorsize=512; blocks=250069680 gpt show: /dev/disk1: Suspicious MBR at sector 0 gpt show: /dev/disk1: Pri GPT at sector 1 gpt show: /dev/disk1: Sec GPT at sector 250069679
      start       size index contents
          0          1         MBR
          1          1         Pri GPT header
          2         32         Pri GPT table
         34          6
         40     409600 1 GPT part - C12A7328-F81F-11D2-BA4B-00A0C93EC93B
     409640       2008
     411648 249657344 2 GPT part - EBD0A0A2-B9E5-4433-87C0-68B6B72699C7
250068992        655
250069647         32         Sec GPT table
250069679          1         Sec GPT header
sudo fdisk /dev/disk0
Disk: /dev/disk0              geometry: 60801/255/63 [976773168 sectors]
Signature: 0xAA55
Starting       Ending
#: id cyl hd sec - cyl hd sec [ start -       size]
1: EE 1023 254 63 - 1023 254 63 [ 1 - 976773167] <Unknown ID>
2: 00    0 0   0 -    0 0   0 [         0 -          0] unused
3: 00    0 0   0 -    0 0   0 [         0 -          0] unused
4: 00    0 0   0 -    0 0   0 [         0 -          0] unused
sudo fdisk /dev/disk1
Disk: /dev/disk1              geometry: 15566/255/63 [250069680 sectors]
Signature: 0xAA55
Starting       Ending
#: id cyl hd sec - cyl hd sec [ start -       size]
1: EE 1023 254 63 - 1023 254 63 [ 1 -     409639] <Unknown ID>
*2: 07   25 159   7 - 1023 254 63 [ 411648 - 249657344] HPFS/QNX/AUX
3: 00    0 0   0 -    0 0   0 [         0 -          0] unused
4: 00    0 0   0 -    0 0   0 [         0 -          0] unused
Thanks in advance !

Can you boot Windows from SSD when it is in the Main drive bay?
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