Booting two Macs from one external drive: 10.8 and App Store?

I boot two Macs from one external harddrive. Does this mean that when 10.8 is sold exclusively via the App Store and thereby linked to a unique hardware identifier, I am going to have issues with activation/authentification each time I switch machines? I have avoided the App Store since I discovered that an app I bought there, and which I really needed to open automatically on log-in, had to be manually re-activated with my Apple ID after every switch (so that I eventually deleted it and reverted to an earlier, non-App Store version).

Welcome to the forum!
  There are a couple of "solutions" to your problem.  The easiest, and possibly the best for you (although it is a bit slower) is to copy your catalog onto the external drive as well.
Then when you plug in the drive, you will always have your latest catalog for access.
The other way is to keep a local copy of your catalog, and copy it onto the local drive as a way to transfer it from one computer to the other.
This has the problem of possibly not being in sync, that is, you forgot to copy it over once and did some editing.  Then you would end up with essentually two different catalogs, instead of one in two places.
  You can copy the catalog either with your OS, or you can "export as catalog" and specify the external drive as the destination.  Then, on your other computer, "import from catalog" and only take the meta-data settings (it's on the import dialog box).
Personally, when I'm traveling, I have my catalog on my external drive as well.  It just makes life easier, and I don't have to worry about it being out of sync, or losing it (and not the images).
So, I would go with the first method, at least to start.  To get your catalog over there, you can either export as catalog or copy it, either one will work.
You can find the location of your catalog file (if you don't know where it is) in the catalog settings menu prompt.  Both the location and the name will be displayed.
Cheers!

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