But when I sync it with my ipod, it says that 'the iPod has been synced with another library' and then asks if iTunes should wipe out the data in my ipod in order to sync with the library.

help! I do not want to lose everything

Sam..  I still got that message too. I went ahead and sync'd anyways.
Make sure you have it all backed up... transfer your purchases to itunes (done in itunes).. then there is not much else you can do but hit the sync button.
For me.. my thoughts were... I could probaby download any magazines again.. recreate any documents if I had to.. I have mostly business related stuff and art work I created from the drawing apps on my I pad.. purhaps not as big an investment as you.. however.. in the end.. I didn't lose anything. it all transfered for me to the new library..
not much else I can say... I found a blog where another person was having the same issue...pretty much they recommended the same steps that I followed..
here is another thread in at a different site you can look at too.. it seems like everyone is using the same process..they mention ipad in here too...
http://www.everythingicafe.com/forum/threads/syncing-your-ipod-iphone-to-a-new-i tunes-library-look-here-first.37178/page-7

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