Can I force sync the apps on my phone to override the settings on itunes?

I have several ipod iphone things that I sync to one computer. yesterday I restored an ipod touch that I have to replace. I right clicked once it was attached to sync if from an older restore. Once I did that I realized i had my iphone attached and not the new ipod touch. I quickly detached the iphone before it could restore, but now it won't sync anything. If I try to click on the apps or hit apply it tells me it will delete all my apps and the records in them. is there any help for me? I have all the info in the iphone but can't get it to let me manipulate any of the apps through itunes.

File>Transfer Purchases will transfer itunes purchases (including apps) from the iphone to the computer.

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