Can't defrag the "systems" files

  When I try to run the disk defragmentor disks C and D defrag ok but "systems" says 6 % needs to be defraged but when I high lite the "systems"  and click on analize disk for a mil a second I see " pass 1 -  14 % than it goes away. I've retried many times to defrag and gave it hours to do it but systems won't defrag. I recently had the HTML Frammer virus but used malwarebites the virus remover and everything seems normal except the defragging.  Can anyone help me on this issue ? 

Here is the answer for XP. It is basically the same defrag for W7 with some small changes.
Defragment Your System Files (Pagefile and Registry) in Windows XP - How-To Geek
Please mark my post as SOLVED if it has resolved your problem. It helps others with similar situations.

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