Can't import CR2 Files

Hi - I just started working with RAW files on my Canon Rebel and am having a hard time importing to Lightroom 5. I did go to preferences and check the box to treat RAW as separate photos. I imported several photos from iPhoto and both the JPG and RAW files appeared (actually that was a hassle because most of the CR2's weren't checked so I had to find them and some of the JPG's appeared twice). After I completed my editing I went back to my original pics in iPhoto and wanted to import a few more. I tried to drag the jpg and cr2 file into Lightroom and 2 photos import but they are both jpg - one is 545 JPG and the other is 545-2 JPG. I can't get the CR2 to import which is what I really want. Does anyone have any ideas?
Thanks so much!

That is why you’re getting duplicates JPGs because iPhoto only presents a JPG for raw files to outside programs. 
To get CR2s from iPhoto into LR you’ll need to export them from iPhoto.  I’m a PC user so I can’t tell you what to do from personal experience but Adobe has a help page detailing a process:
http://helpx.adobe.com/lightroom/help/import-iphoto.html
Otherwise Google for something like (importing raw files from iphoto to lightroom)

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