Can't Remove Ligatures from Document Compiled from Scrivener

I'm a fiction writer and I use Scrivener as my mainstay writing tool. But I just purchased Pages recently when my copy or Neo Office no longer was compatable with OSX. I just tried opening a story I need to submit and the ligatures for fi and fl were all over the place. I tried going through Format > Font > Ligatures and through the Document Inspector to turn them off. While they Menu and Inspector said they were turned off, they weer still in the document. I tied selecting the word, the paragraph and the whole document and turning them on and off. I've tried compiling as a .doc, .docx, .rtf. Nothing helps. Has anyone come across this? It seems silly to have a remove ligatures option that doesn't remove ligatures.

Text was all written in Scrivener, compiled into a .doc file. There were no ligatures in the text. When I opened the document in Pages to double check the formatting, I had words like "flailed" now look like "‡ailed." When I tried to remove or turn off the ligatures through the Format menu or the Document Inspector, it wouldn't remove them even though I've told Pages to through those options.

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Can't Remove Ligatures from Document Compiled from Scrivener

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