Can't see my iPad pdf files on iTunes

Since the new update I have a problem. I can see the PDF's in my iPad, but when I connect the iPad to my Mac I cannot see them in iTunes. I can see my old books and PDF's just fine, but when I tried to drop a new PDF file into the book category of my connected iPad via iTunes it doesn't show up on the latter. It shows up on the iPad, but I can't see it in iTunes. Any ideas what could be the problem?
And is it possible to change the information of the books (Title, author,...) in the new ibooks app on Mac?

Hello celyne94,
This error message is typically related to a conflict caused by security software installed on your computer.
Related errors: 2, 4, 6, 9, 1000, 1611, 9006. Sometimes security software can prevent your device from communicating with either the Apple update server or with your device.
Check your security software and settings to make sure that they aren't preventing a connection to the Apple servers.
Resolve iOS update and restore errors
http://support.apple.com/kb/TS3694
Cheers,
Allen

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