Can't wake G5, odd black square on left side

I've been having intermittent problems when trying to wake my G5. I have a KVM switch and everything has been work with no problems up until the last Security Update. Now, on occasions, when I switch to the G5, the desktop is still showing, when it should be the screen saver. Moving the mouse pops the arrow up to the left side of the display with a icon sized black box around it. The arrow can be moved down, but it jumps by the size of the icon. Requires a hard re-boot. I've repaired permissions several times. The problem is intermittent. I've check some of the logs, but nothing jumps out. Any ideas which log I should look in?

First, it would be a good idea to determine whether the problem is Software related, or Hardware. If software, then you could possibly remedy by restoration from a backup, or complete reinstall of the OS, if you don't backup.
Do a screenshot (Shift-Command-3), and view this screenshot on another computer. If it is visible, then it is definitely software related. However, I don't think it is. I think the coincidence wit the connection of a USB key is just that, coincidental. But we must eliminate the possibility before proceding.
If the screenshot does not show the "bar" or "strip", then you should really consider the problem to be hardware related. As the MBA is not really user serviceable, the next step would be taking it to an Apple Authorized Service Center or Apple Store Genius Bar for diagnosis and repair.

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