Cannot backup to external drive since installing updates for Lion.

Since installing updates to Lion os, my external 2TB western digital drive now cannot backup and disc utility cannot repair.
I apparently now need to reformat the external drive but first must back up the files on the external drive or they will be erased.
Does this now mean that I have to buy a second external drive and transfer all the files (one and a half TB's worth) on the existing external drive to the new external drive and then reformat the old drive and then transfer the files back onto the old drive?
Why do software updates for os cause problems with external backup drives?
I thought the whole point of updates was to keep the system running smoothly and not create havoc.

if you backup to the device it should not matter if the backup is erased as long as your main hd don't explode before you can back it up to the external hd once more after it have been formatted
if the hd is empty timemachine does a 100% full backup of everything on the hd to the ext hd

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