Cannot copy applications from Disk Images to Applications Folder

I downloaded a couple of applications that I use to my hard drive today and then tried to copy those applications from the disk images to the Applications Folder. In both cases, the copy process got partially completed and stopped with an error message that the item already existed in the destination. This happened even though I had made sure to delete the old application and empty the trash. It also happened with a completely new application that I had never had on my hard drive before.
I then tried to copy the application to the desktop and it got partway done and then stopped with a message "The operation cannot be completed because an item with the name "Path Finder4" already exists."
I then tried to copy it to an empty folder...same error.
I am running as Administrator and have had no problems with Leopard for the past week until this.
I suspected permissions and tried to boot from the Leopard Install DVD and repair permissions but repair permissions was greyed out. I ran "Verify Disk" and it said I needed to run "Repair Disk". I tried that but it failed while trying to reconstruct the B-Tree.
I am now going to try Disk Warrior (booting from a bootable TIger backup) but I wondered if anyone was having similar problems?

UPDATE: Disk Warrior found a lot of errors, but said it was able to fix all of them, so I told it to rebuild the directory. It did so successfully and then I rebooted to see if it did in fact work.
The bootup was considerable faster (no doubt a result of the cleaner directory?) and I was then able to copy the application that I downloaded from the Disk Image to the Applications folder.
So I am running again...seems o.k...but for obvious reasons I am nervous!

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