Cannot get rid of the horizontal lines (field order or interlacing?)...

OK- I have footage which is 25fps DV Pal 720/576 (was shot on tape, 4:3 letterboxed), lower field/even which I am editing into a short 25 second sequence which needs to be 16:9 (as my final project will be that, and this footage/sequence is the only 4:3 one in the ten to be used).
The current sequence I have worked in is showing up as 25fps DVCPRO Pal 1280/720 also lower field/even and it is working OK (NO idea how!) except for the clips I am shrinking for a multiple screen section- they are shrunk to 45% and quite interlaced looking- meaning that I am seeing quite bad horizontal lines even in the playing back of the sequence, before export.
Notably one clip is FINE- it is different in that it has been "grown" to 180% because of the fact that it was 4:3 letterboxed and I needed it to appear 16:9. I see no interlacing/field order issue...
What do I need to do in order to "fix" this now that I have a gorgeous sequence and cannot export it to look like anything decent?
I feel I do NOT understand the settings I should set up for capture, working and export- I am just stabbing in the dark here. I guess a problem I have is that while I learn super fast when shown to do something I don't make the connection when reading manuals well. In other words- if it is not a response to an issue I have I cannot tell that it is the answer I seek. I am so despondent.
Ideally I would need to be able to fix the mess as the work I have done is long and hard (I am not really a bad editor- creative but clueless when it comes to setting things up right, it would seem!). Please and many, many thanks.

Thanks for that. It was a horrible blow as he had just been nominated for his first BAFTA and I was so hopeful that he would take me on as an apprentice...
OK- the issue will be one most students creating showreels will encountering as we don't tend to shoot ideal footage, on different cameras we don't "know", and certainly don't have a say about how it is ingested. So it is a case of doing the best we can with what we have.
I ended up dealing with it by using Compressor to "reconform" the footage I was using and to also use a 30%/45% scale-down of each of them and made a multi-clip collage of the material. The "problems" are almost lost in the scaling down, so I am OK with it.
Of course there is still the problem that if I move from the college's Avid system to my home set up of Final Cut Pro I get very annoying issues also with the Avid's exports (QT6) showing up as 5:4 instead of the 16:9 it was exported as!

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