Cannot link to library since Yosemit upgrade

Hello,
I am upgraded my Macbook Pro to Yosemite this morning and the software that I was developing cannot find find the libraries anymore...
It's a software using OpenGL 4.0 and the libraries that I cannot find anymore are GLFW and Assimp... I tried uninstalling Xcode by moving it into the Trash, emptying it and Re-installing it but it didn't solve my problem. Did anyone face the same situation?
Thank you for your help!

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