Cannot remove books from iTunes after moving to iBooks

I'm not sure if this question belongs to iTunes or iBooks category but since it's related to books I think here is more relevant.
I moved to iBooks long ago and I do not have a "Books" section on iTunes.
But when I plug my iPhone and go to "Sync Books" section, I see a list of books that does not exist in iBooks nor iTunes.
To make sure, I backed up the files and deleted all the books in iBooks but still i see those "ghost" books on "Sync Books" of iPhone.
When I try to sync them, I get the error message saying that those files do not exists hence they can not be synced.
How can I get rid of them?

Hi Judy,
Problem solved.
Go into Mail/Acounts and delete you iCloud account.
Now add a new account and type in your details for MobileMe/iCloud.
It should now work. O noticed the default server name is different.
Hope this helps.
Yours,
Charlie

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    Test to see if you can download a free application from the App Store.  If this was successful, test downloading the book again.  Try closing all open applications and power cycling the device, test the results.  Make sure you have an active Internet connection.  If these results were unsuccessful, see the steps in the article below that refer to iOS. 
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    Mac OS X:
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    That is correct.
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