Cannot see all my images in Library after LR 4 upgrade

Firstly let me explain that when it comes to LR and catalogues I am a positive newbie, I just use LR to tweak images, and I am not very organised. So excuse the iffy terminology below.
When I used LR3.6 The Library option listed all my files on the left hand side under 'Folder' and showed a sub-folder for each year 2009-2012. I have now upgraded to LR4, and all I can see is 2011. During the install process of LR$ it asked me if I wanted to upgrade the process model, which I said yes and it did. Then, because I had read that 4.1 fixed a lot of issues, I downloaded and installed RC4.1 which I am running now.
How do I make LR4 show me all my Folders? I don't think I should be re-importing them all.
Thanks in anticipation, and soryy for the vagueries above.

Oh, this is probably relevant....
In Library view, the files that are in the 2011 folder are all called DSC00nn-2.NEF ie now have -2 appended to the name.
If I try to add an existing Folder, ie 201, it takes me to Import, and wants to Import the whole lot. ie they are all checked.
Looks like my catalogue is broken, and my worry is all my old edits are lost too.

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