Cannot sync Iphone 3gs - application error

Has anyone else had issues with the sync failing because Itunes said it couldn't determine the apps installed on the phone? I recently had updated my Itunes to the latest version and then the Iphone 3GS to IOS 5. Since then, I haven't been able to sync. I have never had this amount of issues between Itunes and IOS updates since I got the phone, so this is a tad bit disturbing. Windows 7 box if you are curious on my PC O/S.
Thanks for any help you can offer.

I would try and reboot your phone and see if this helps. Hold down the power button and the home button for 10 seconds, or until the screen goes black and continue to hold down the power button until you see the apple logo come on.
Romans 5:8

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