Canon or Nikon option format for NLE

Dear friends,
what´s your opinion on editing video with footage from:
Canon 5D mark II (QT/Avi 30 fps)
or
Nikon D90 (Motion-jpeg/Avi 24 fps)
I think both need convertion to APRes ou something for FCP, but what´s for best results, easy use with CPU, etc? Which format is better?
Consider as an example both at 720p for fair evaluation.
Thanks very much.

ProRes; ok, for Canon and Nikon.
What about from an AVCHD camera?
Is it a simple task to convert to ProRes too from AVCHD? Or is a longer process with huge files at the end and lots of CPU to do it? More time and CPU effort than that with those two HD flavors from Canon and Nikon?

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