Caption inconsistencies and timecode display is non-drop only?

In QT 7 Pro, the time display has an option for "Timecode: Non-Drop-Frame". I'm pretty sure that I have tried multiple videos that are drop frame, but the only option in the display is non-drop.
Also, a lot of caption files that I add seem to drift, and are late by about 2 seconds after 45 minutes of video. These same video/caption files line up perfectly in other systems.
Just wondering if anyone can help me understand what might be happening.

I am using the easy setup. FCP does differentiate between DF and NDF with the semi-colon and colon respectively. I have tried manually putting in a semi-colon, but it still makes it NDF. I currently log all of the clips. Then I control click on the media end time of each clip and it gives you an option to make it DF or NDF. But when I do this it changes the media out times due to the conversion. Also, if I go to batch capture my clips and I don't have a tape in my deck yet, I will receive a warning saying something like "You are about to capture drop frame media from a device currently detecting a non-drop frame media source." I don't get this warning if I already have the tape in because once the tape is in it sees it as DF.

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