Changed Compilation status and now, after syncing, iPod is missing music

Frustrated with not being able to view all the Artists on my iPod, this past weekend I removed the "Part of a Compilation" info from most of my compilation-classified albums. I then synced my iPod. It didn't take very long and I guess I found that odd, but I just assumed all the music was still on my iPod and didn't bother to check.
Today, I find that while all the music I changed the info on remains on iTunes, it's missing from my iPod and won't sync.
Is there something I need to change on my library to get the iPod to load these missing songs? They were on it before, albeit as part of a compilation.

Please dont chuck it out of the window, it might land on some poor elves.
Do the iPod Disk Diagnostic as posted earlier by tt2, it wont fix your problem but help in troubleshooting.

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