Changing Resolution Settings Within Project

Hi Guys,
Ok, here's my problem.....
I have captured my footage at 1920 x 1080 25fps and 48Khz with my Canon DSLR and imported it into my FCP project.  I deliberately created my sequence settings at 1280 x 720 25fps as this was to be the output format and when I added the 1920 footage to the timeline, FCP asks me nicely if I would like to change the sequence settings to match the footage - to which I politely decline (mistake, I know now...)
This had the effect of scaling down my 1920 footage to 1280, which was fine.  The issue I now have is when I want to export it as a reference movie for DVD creation, it takes hours as the reference movie is taking the settings from the project, which is 1280 x 720 and my footage is still 1920, which means lots of re-rendering to do.  Took me ages to figure out why the ref movies were taking so long to export! 
So I have been trying to figure out a way to somehow change all of my completed timeline that consists of 1920 x 1080 footage downscaled to fit in my 1280 x 720 timeline back to full 1920.  Still with me??
I have tried manually resizing the individual clips using their Motion tab (they are at 66.6% now as they are squeezed into a 1280 x 720 timeline) back to 100% which works, but leaves me with e green proxy render bar above the clip.  The same happens when I copy and paste the footage into a fresh sequence set to match the clip at 1920 - green proxy render bar and loads of rendering time.
So if there is any way I can grab my completed, edited timeline and somehow revert it and the footage back to full 1920 resolution, it would save me a load of time in rendering and output!
Anyone any ideas??

Hi Tom,
Thanks for youe suggestion.  I did just that an the only discrepancy I can see between the footage and sequence settings seems to be in the audio format.  The sequence is 32 bit floating point whilst the footage is 16 bit integer.
I can's imagine this will be the problem as if I start a new project and use the full 1980 clips,  I can export reference files no problem.

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