Cinima Display fades Between blue and the deskop after my Mac Pro sleeps

Hello all,
I really hope someone can help. I have a Mac Pro Running 10.5.4 and a 23 Inch Cinema Display. When I wake my machine from sleeping the desktop appears then about a second later the screen fades blue. After a second of blue it fades back to the desktop. This continues on forever and the machine is unusable until I cut the power and restart the machine.
The same issue will happen if the resolution on the monitar is changed.
I have tried to reset the pram, reset the smc, take out the graphics card and then place it back. I switch the cable from port one to two of my graphics card. I also reinstalled leopard as well as downgrading back to tiger.
When I hook the monitor up to my macbook it sleeps and awakes fine.
Finally this morning I realized that if I discounted using the monitors built in hub then the screen will awaken without issue.
Any idea's? Has anyone had a similar issue?

Hi there. It could be one of your drives is actually defective and causing I/O to slow down to a crawl. To verify this, try inserting the DVD that came with your Mac Pro and restarting the machine while holding down the 'C' key. This will boot up the machine off the DVD and bypass your hard disks. If it boots quicker there could be a problem with the drives or something else.

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