Clearscan Errors in Preview and other pdf viewers

I scan a lot of documents and have started using the ClearScan OCR option.  This produces very good quality scans and very small file sizes, but I've been running into problems when I try to read my pdfs in Preview or other pdf readers.  If I open a ClearScanned pdf in Preview and try to copy and paste some of the text, it pastes just fine.  If I save the pdf in Preview, however, and then try to copy and paste text, the result is something like this: "␣␣␣␣␣ ␣␣␣".  The PDF still looks fine, it doesn't change its visual appearance, but the OCR is no longer correct. This is a big problem because I use several other pdf readers to read and annotate my PDFs, and any time I save a ClearScanned PDF I lose the functionality of scanned text (since I can no longer copy and paste or even search the PDF since all the letters have been replaced with "␣").  Has anyone else had any problems with ClearScan?  Is ClearScan only compatible with Adobe, or is there any way to save a ClearScanned PDF so that it will work correctly with other PDF viewers?   Thank you!

I have not tried it, but I've seen posted in another thread that one of the Preflight options in AA9 allows you to embedd the fonts created by the ClearScan process. This might fix your problem. You just have to figure out how to use Preflight!
I just tried this - it's the "Embed fonts" option under the PDF fixups category. I can't tell if it will do what you need though, as I don't use Preview or any other PDF viewer. It did seem to embed fonts that were previously not embedded, though (a) they still didn't show up in the PDF Optimizer dialog, only in the document properties dialog, and (b) it seems like the ClearScan were embedded in the first place, even before I ran this Preflight.

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      Element.dwErrorStatus = CERT_TRUST_IS_OFFLINE_REVOCATION (0x1000000)
      ----------------  Certificate AIA  ----------------
      No CRL "Certificate (0)" Time: 4
        [0.0] http://vshqeca-sub.contoso.net/CertEnroll/VSHQECA-SUB.contoso.net_VS
    HQECA-SUB-CA(2).crt
      ----------------  Certificate CDP  ----------------
      Expected Base CRL "Delta CRL (43)" Time: 4
        [0.0] http://vshqeca-sub.contoso.net/CertEnroll/VSHQECA-SUB-CA(2).crl
      ----------------  Certificate OCSP  ----------------
      No URLs "None" Time: 0
      Application[0] = 1.3.6.1.4.1.311.54.1.2 Remote Desktop Authentication
    CertContext[0][1]: dwInfoStatus=102 dwErrorStatus=40
      Issuer: CN=VSRMSRootCA
      NotBefore: 03/26/2014 2:27 PM
      NotAfter: 03/23/2024 1:02 PM
      Subject: CN=VSHQECA-SUB-CA, DC=contoso, DC=net
      Serial: 5200000005b0d119bfff437395000000000005
      Template: SubCA
      08 8b cf eb c2 21 5f 4a 75 63 87 34 4b c0 29 bf 14 2b c9 fa
      Element.dwInfoStatus = CERT_TRUST_HAS_KEY_MATCH_ISSUER (0x2)
      Element.dwInfoStatus = CERT_TRUST_HAS_PREFERRED_ISSUER (0x100)
      Element.dwErrorStatus = CERT_TRUST_REVOCATION_STATUS_UNKNOWN (0x40)
      ----------------  Certificate AIA  ----------------
      No URLs "None" Time: 0
      ----------------  Certificate CDP  ----------------
      No URLs "None" Time: 0
      ----------------  Certificate OCSP  ----------------
      No URLs "None" Time: 0
      Issuance[0] = 1.2.3.4.1455.67.89.5
    CertContext[0][2]: dwInfoStatus=10c dwErrorStatus=0
      Issuer: CN=VSRMSRootCA
      NotBefore: 03/23/2014 12:52 PM
      NotAfter: 03/23/2024 1:02 PM
      Subject: CN=VSRMSRootCA
      Serial: 15630f00af95e2a74e493d40cfa5bb62
      15 b9 31 47 68 66 ed 51 a3 ae db 78 14 41 e4 47 c3 fe 67 33
      Element.dwInfoStatus = CERT_TRUST_HAS_NAME_MATCH_ISSUER (0x4)
      Element.dwInfoStatus = CERT_TRUST_IS_SELF_SIGNED (0x8)
      Element.dwInfoStatus = CERT_TRUST_HAS_PREFERRED_ISSUER (0x100)
      ----------------  Certificate AIA  ----------------
      No URLs "None" Time: 0
      ----------------  Certificate CDP  ----------------
      No URLs "None" Time: 0
      ----------------  Certificate OCSP  ----------------
      No URLs "None" Time: 0
      Issuance[0] = 1.2.3.4.1455.67.89.5
    Exclude leaf cert:
      46 d2 e8 24 8f d5 4e 9b 8b d5 d5 9a 4b 1f 2d 62 1c 00 69 e7
    Full chain:
      65 ce 56 db 3c 65 6f f5 a7 6a 39 23 03 bb ee fd 9f 15 c5 00
    Verified Issuance Policies: None
    Verified Application Policies:
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    ERROR: Verifying leaf certificate revocation status returned The revocation function was unable to check revocation because the revocation server was offline. 0
    x80092013 (-2146885613)
    CertUtil: The revocation function was unable to check revocation because the revocation server was offline.
    CertUtil: -verify command completed successfully.
    Many thanks in advance...
    B
    B

    Here's the output of the getreg ca command. I didn't know about that one...
    HKEY_LOCAL_MACHINE\SYSTEM\CurrentControlSet\Services\CertSvc\Configuration\VSHQE
    CA-SUB-CA:
    Keys:
      CSP
      EncryptionCSP
      ExitModules
      PolicyModules
    Values:
      DSConfigDN               REG_SZ = CN=Configuration,DC=contoso,DC=net
      DSDomainDN               REG_SZ = DC=contoso,DC=net
      ViewAgeMinutes           REG_DWORD = 10 (16)
      ViewIdleMinutes          REG_DWORD = 8
      CAType                   REG_DWORD = 1
        ENUM_ENTERPRISE_SUBCA -- 1
      UseDS                    REG_DWORD = 1
      ForceTeletex             REG_DWORD = 12 (18)
        ENUM_TELETEX_AUTO -- 2
        ENUM_TELETEX_UTF8 -- 10 (16)
      SignedAttributes         REG_MULTI_SZ =
        0: RequesterName
      EKUOIDsForPublishExpiredCertInCRL REG_MULTI_SZ =
        0: 1.3.6.1.5.5.7.3.3 Code Signing
        1: 1.3.6.1.4.1.311.61.1.1 Kernel Mode Code Signing
      CommonName               REG_SZ = VSHQECA-SUB-CA
      Enabled                  REG_DWORD = 1
      PolicyFlags              REG_DWORD = 0
      CertEnrollCompatible     REG_DWORD = 0
      CRLEditFlags             REG_DWORD = 100 (256)
        EDITF_ENABLEAKIKEYID -- 100 (256)
      CRLFlags                 REG_DWORD = 2
        CRLF_DELETE_EXPIRED_CRLS -- 2
      InterfaceFlags           REG_DWORD = 641 (1601)
        IF_LOCKICERTREQUEST -- 1
        IF_NOREMOTEICERTADMINBACKUP -- 40 (64)
        IF_ENFORCEENCRYPTICERTREQUEST -- 200 (512)
        IF_ENFORCEENCRYPTICERTADMIN -- 400 (1024)
      EnforceX500NameLengths   REG_DWORD = 1
      SubjectTemplate          REG_MULTI_SZ =
        0: EMail
        1: CommonName
        2: OrganizationalUnit
        3: Organization
        4: Locality
        5: State
        6: DomainComponent
        7: Country
        8: UnstructuredName
        9: UnstructuredAddress
        10: DeviceSerialNumber
      ClockSkewMinutes         REG_DWORD = a (10)
      LogLevel                 REG_DWORD = 3
      HighSerial               REG_DWORD = 2c (44)
      CAServerName             REG_SZ = VSHQECA-SUB.contoso.net
      ValidityPeriod           REG_SZ = Years
      ValidityPeriodUnits      REG_DWORD = 5
      KRACertHash              REG_MULTI_SZ =
      KRACertCount             REG_DWORD = 0
      KRAFlags                 REG_DWORD = 0
      CRLPublicationURLs       REG_MULTI_SZ =
        0: 65:C:\Windows\system32\CertSrv\CertEnroll\%3%8.crl
        CSURL_SERVERPUBLISH -- 1
        CSURL_SERVERPUBLISHDELTA -- 40 (64)
        1: 6:http://vshqeca-sub.contoso.net/CertEnroll/%3%8%9.crl
        CSURL_ADDTOCERTCDP -- 2
        CSURL_ADDTOFRESHESTCRL -- 4
        2: 10:ldap:///CN=%7%8,CN=%2,CN=CDP,CN=Public Key Services,CN=Services,%6%10
        CSURL_ADDTOCERTCDP -- 2
        CSURL_ADDTOCRLCDP -- 8
      CRLPeriod                REG_SZ = Weeks
      CRLPeriodUnits           REG_DWORD = 2
      CRLOverlapPeriod         REG_SZ = Hours
      CRLOverlapUnits          REG_DWORD = 0
      CRLDeltaPeriod           REG_SZ = Days
      CRLDeltaPeriodUnits      REG_DWORD = 1
      CRLDeltaOverlapPeriod    REG_SZ = Minutes
      CRLDeltaOverlapUnits     REG_DWORD = 0
      CAXchgValidityPeriod     REG_SZ = Weeks
      CAXchgValidityPeriodUnits REG_DWORD = 1
      CAXchgOverlapPeriod      REG_SZ = Days
      CAXchgOverlapPeriodUnits REG_DWORD = 1
      MaxIncomingMessageSize   REG_DWORD = 10000 (65536)
      MaxIncomingAllocSize     REG_DWORD = 10000 (65536)
      CACertPublicationURLs    REG_MULTI_SZ =
        0: 2:http://vshqeca-sub.contoso.net/CertEnroll/%1_%3%4.crt
        CSURL_ADDTOCERTCDP -- 2
        1: 0:C:\Windows\system32\CertSrv\CertEnroll\%1_%3%4.crt
        2: 2:ldap:///CN=%7,CN=AIA,CN=Public Key Services,CN=Services,%6%11
        CSURL_ADDTOCERTCDP -- 2
      RequestFileName          REG_SZ = C:\VSHQECA-SUB.contoso.net_contoso-VSHQECA
    -SUB-CA%4.req
      SetupStatus              REG_DWORD = 1
        SETUP_SERVER_FLAG -- 1
      Security                 REG_BINARY =
        Allow CA Administrator      BUILTIN\Administrators
        Allow Certificate Manager   BUILTIN\Administrators
        Allow CA Administrator      contoso\Domain Admins
        Allow Certificate Manager   contoso\Domain Admins
        Allow CA Administrator      contoso\Enterprise Admins
        Allow Certificate Manager   contoso\Enterprise Admins
        Allow Enroll        NT AUTHORITY\Authenticated Users
      CACertHash               REG_MULTI_SZ =
        0: 1e 0a 6c ad 0f 76 07 df 06 93 fc 06 8b cc 08 4e 19 1b 71 0f
        1: 28 22 a0 83 65 b4 28 cf d1 fc 80 ab 1d 47 51 67 60 30 f4 ff
        2: 08 8b cf eb c2 21 5f 4a 75 63 87 34 4b c0 29 bf 14 2b c9 fa
        3: 82 2b 18 53 70 52 57 8b 5c a4 01 a2 07 be 35 7a ba 4e 34 b1
      CRLDeltaNextPublish      REG_BINARY = 05/24/2014 6:59 PM
      CRLOverlapPeriodUnits    REG_DWORD = c (12)
      RequestKeyIndex          REG_DWORD = 2
      RequestKeyContainer      REG_SZ = VSHQECA-SUB-CA(2)
      CRLNextPublish           REG_BINARY = 06/06/2014 6:59 PM
      CAXchgCertHash           REG_MULTI_SZ =
        0: ef 91 d7 19 22 95 69 6f 79 e2 8d ad 80 55 b4 6c 78 ca fa 73
        1: ba 37 08 cd fc cc b9 b6 c9 08 dc 55 e5 fb 0e 3e c4 bc 60 57
        2: fd 9b 26 91 d3 5a 9f c0 f5 26 47 74 2f 7e 85 28 78 6f 1c 4c
        3: da de 90 50 73 51 ee d9 10 3b e4 94 6a a3 5f 9c 71 81 9b 1c
        4: 52 19 e2 b5 ab 73 1c 75 86 7f 1d ad ec c7 38 ff c8 81 2d f4
    CertUtil: -getreg command completed successfully.
    New screengrab of pkiview coming right up...
    B

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