Cloned HDD and replaced but now getting permissions issues.

I'm receiving that error message.  BACKSTORY:  I was experiencing general slowdowns when using various applications and sometimes odd behavior when browsing the internet with Chrome (this site is untrusted errors that wouldn't replicate after starting a new session sometimes, facebook, my bank, sometimes even google.com)  I suspected that my HDD may be starting to fail, so I bought a new drive, cloned my current HDD and installed the new one.  I'm still experiencing some slow downs, but I haven't had the other issue resurface, so I'm thinking a fresh OS and restore of needed data is next.  Anyway....my issue currently is that I can't delete anything.  I created a blank folder and tried to delete that and couldn't.  Do I need to do anything on the OS level to acknowledge this new HDD as my primary?  Please help

Well cloning crap is still crap, but now it's optimized/defragmented faster crap because of the cloning onto a new drive.
Run through this list of fixes systematically and see how it goes.
Fresh install is a last resort usually.
..Step by Step to fix your Mac

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