Comments show in iWeb, but not on published site (on Mobileme)

Does anyone know how I can get the comments I see on my blog entries in the iWeb app to show up on my website when published (I'm using Apple's Mobileme service).
They have always worked in the past, and I recently redesigned the site. I changed the theme from a predesigned one to the blank white one (and then designed my own look). As stated before I can see the people's comments in iWeb, but when I published all the previous entries (in the new design), the comments aren't showing in the archive page nor the individual entry pages. Is there a fix?

Oh, rats. Do I need to remove the folder that I published to? I'm not even sure where to find it. I have republished successfully with the comments still in iweb but they don't show up on-line. I'd really like to get them back on if possible.

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