Compressor 3.0.5 Encoding something completely different

I have used my Compressor 3.0.5 for many years without any issues.
Recently I have had a nightmare of a project which involved corrupted mini-dv footage and when I encode the timeline and bring the M2V's into DVD studio Pro, both the video and audio AC3 files are something that is not on the timeline. It looks like the software choose to encode a random clip in my FCP browser instead of encoding what is on the timeline.
So far I have tried deleting the FCP, Compressor & DVDSP .plist's from Library/Preferences and have repaired permissions. One of which pertains at an ARDAgent app, will not be repaired but not sure if this has anything to do with anything.
Any help is surely and desperately appreciated. My client has been waiting a long time for their DVDs.

It sounds like you used the Send to Compressor workflow. If you did, try exporting a QuickTime movie, current settings. Then bring that into Compressor to make your files for DVD SP.
Russ

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Uploaded with Skitch!
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