Compressor outputs low quality

Its my first time using compressor, and Im writing with my left hand so bear with me. I have a batch of files I want to convert from ProRes to PNG for realtime playback in different tempoes with alpha channel. When I add the files, choose right resolution and codec it doesnt playback as smooth as if I add the files one at a time into motion and convert them there. Its probably something I overlooked, but I just cant figure out what..?

Jan,
why don't you give us your settings, ProRes is a codec, not a size. And in what size are your PNG files? Frame dimensions? And just to understand: these are frame grabs or stills that you're converting to PNG? And you can save directly out of FCP and import the resulting files into Motion, skipping compressor altogether.
Robb

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