Compressor transcode problem

I have recent problem with Compressor: ridiculously slow at transcoding D7 files to Pro Res. Problem not actually in the transcode itself but takes the computer a bizarrely long time to apply the codec to each item before I can submit the batch: spinning wheel of doom for hours!
Strange thing is it's happened recently after working ok in the past and I cant see whats changed. Reckon it can only be an OSX update BUT i've seen this (unresolved) problem on old threads here and elsewhere, all archived now for some reason and no real answers for such a common issue. Can only do 10 files at a time but this is hardly 'batch processing' !
I've tried Compressor Repair from here: http://slccut.com/tutorials/40-apple...ng-preferences but this doesn't seem to help. Disconnected all ext HD's but no joy. I'm tearing my hair out as I've got 200 D7 files to transcode to ProRes and a deadline to meet! Anyone got any feasible ideas? (Would updating to latest OS help? I realise this sounds crazy 'solution' given that it was ok before on same OS but Im desperate now)
Compressor 3.5.3 (FCS3)
OS X 10.6.8 on MacPro 12 core, 12GB RAM

No, looks like you are right thanks Russ: easy to batch process and you can set up a Preset for your encoder settings and SUPER fast compared to Compressor - which is both exciting and slightly worrying at the same time. (How can Streamclip do it so fast if Compressor is so horribly lumpy? Does it miss something out? Will FCP be just as happy with the files? Has my time spent transcoding in the past just been cut down to nothing with no more swearing at the computer and no more hanging around? ) We'll see. I'll let you know...

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