'Conforming' Media - What Is That All About?

Guys,
I've got 5 Premiere CS5 projects that are UK PAL WS containing a mixture of 1080i and XD CAM footage (the original footage is HD but I want SD output). My system is an Intel Quad Core running Windows 7.
I also have a 'master' project that incorporates these five sequences which I then link to Encore for the production of a DVD.
Anyway, for some reason (and this is why I am posting this), one of the sequences persistently runs the message 'Conforming' fileXD CAM.mpeg in the bottom right hand corner. Sometimes when I load the master project (or the individual project), this process completes itself successfully, sometimes I get an error message in the form of a red 'cross' bottom right and no audio.
It's frustrating me because I've burnt a disc before I realsied what was going on and the audio from this file in the sequence is missing.
So can anyone help me to understand why this happening, why this one project / sequence is behaving this way when the other four are fine and why the audio is missing form the DVD?
Many thannks,
Chummy

Thanks Harm.
I do wait for the conforming to finish, otherwise the audio won't preview and yes, trouble can follow.
The issue here is that this one project, when the conforming is finished, does it all over again when I go back to it another day.
The media is where is always was, on an external drive.
What confuses me is why this one project, out of five, does this? The other four are fine.
I know it's not possible to look in to my computer but I'm wondering what the explanation could be?
What might be different about this project that causes constant 'conforming' every time and the occassional errors with it.
Chummy

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