Copied sequences do not maintain integrity

Working on a long-format doc. I created about 6 source sequences for the client that we are now pulling from to create the story. When I copy and paste sections from these sequences to the new sequence using the command C/Command V function the sequences come in with black flash frames, changed aspect ratio, and lost audio adjustments. This is going to cost me potentially days of work.
We do have a lot of different formats. The Compressor column in the browser is showing: XDCAM EX 720 24p, AppleProRes 422, 7D, and DVCPRO HD 1080i60. With each of the original sequences I set it for whatever fcp suggested as the native format. With the group sequence I set the sequence settings for 1280 x 720 Aspect Ratio HDTV 720p 16:9, PAR - square. Quicktime Video Settings Compressor - XDCAM EX 720p 35 MB/s VBR.
Is there a faster way of combining these elements without losing so much of the editing adjustments? I am coming from AVID and the problem is handled differently. In my experience formats are working well together there and then need transcoding at the end.
Thank you.

That will happen when you mix FRAME RATES. Copying from a 23.98 sequence into a 29.97 sequence, or visa versa. Mixing frame rates is BAD...doesn't go well in FCP. You need to convert everything to a uniform frame rate....should have happened before you started editing.
But why do that, right? It would have taken SO MUCH TIME to do that. Well...now that you have to fix this mess, how much time will it take?
Shane

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