Copying referenced files

Hello,
I use Snowleopard and Aperture 3, all latest updates.
I have located the majority of my photos as referenced files on an external harddrive A in a folder called Photography and sorted identical to my Aperture file structure which goes by year: ex: 2003 and "relocated 2003" on external harddrive A.
I wanted to make a backup copy onto other external harddrives of all these referenced master files and I copied the folder " photography " and all its contents onto hard drive B. The contents are all there...but how do I reconnect my files? when I hook up drive A, and run Aperture, I can edit and work on my referenced masters files. But when i hook up drive B, I cannot locate the referenced files and it says the file is off line. If I go and navigate in the "locate referered file"...i can see my drive B and navigate to all its contents but searching manually for one file among 16.000 is too daunting .... Is there a better way to make working copies of my referenced master files that work when i connect the drive with the referecend master copies on it?
How should I proceed and how should I best make copies of my referenced masters and vaults?
Any help is very much appreciated,
thank you,
angelique

Angelique,
You would have copied your referenced photos across using Finder, so Aperture doesn't know anything at all about the copies, as they have never been referenced(imported) from the drive B to which they've been copied.
This isn't a problem, as you are, after all, taking a backup copy of drive A photos, and will only be resorting to drive B if the photos get lost.
For referenced photos, a good approach is to run a vault to save the database that keeps track of all the changes to the photos, and a backup of the actual photos (as you have done).
If you need to restore lost photos (assuming Aperture still has a record of them, and it's only the referenced image itself that's been deleted), you could restore the image using Time Machine, or by copying the image from drive B back to drive A.
If you lose the entire A disk and need to use B instead, you'll need to reconnect the images. Why? Each disk as a unique id number that Aperture uses to reference the source of the images. Even though the B disk may be an exact copy of the A disk, it's id number will be different - so you have to tell Aperture where to find the images again.
Does that make sense?

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csmun
Welcome to the Apple Discussions.
But, how can I copy the old referenced photos into my library (they are all over the place)? Is there anything like "Copy all files to the library"?
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<Email Edited By Host>

I migrated my MAC Aperture Libraries to a separate external drive and lost some of the references to the Master.
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It is not as complex as you are making it. Aperture is not per se an editor. It is for storing and organizing, and quickly decoding RAW images. It is a pretty good editor, but it has the feature to allow you to specify an External Editor to which you can send images for more complex editing, and back -- all from within Aperture.
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Depending on how your folder hierarchy is organized you might be able to do this with file->relocate masters and one of the options of folder organization that is provided but... if you have complicated hierarchy that Aperture will not reproduce then you can just copy all the entire folder hierarchy to the new drive using finder and then use file->locate masters to reconnect them to Aperture like this...
Aperture 3 – Locate Referenced Files « RB|Design
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William is right - use the provided tools.
. Never once could it not find the images once I took it and showed the exact path to where the images were newly located. So what happens if that drive ever fails completely and I have to replace it with a totally new backup?
There must be something wrong with your external drive, if reconnect is not working. I had never, ever trouble to reconnect the originals after copying or cloning a drive, when I restored a mac from my backup.
Check the filesystem on your field drive, if the file system is MacOS Extended (Journaled).

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Half of my pictures look blank after importing my Apeture library into my new iMac.
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