Corrupt files - tracks keep restarting in itunes?

I've been searching high and low for the cause or solution to this problem with no luck so maybe someone could help me out.
A while ago I important my entire MP3 collection into iTunes en mass. I told iTunes to copy files to the media folder and order them.
After a while I realised many albums within my collection had developed a reoccuring problem:
The track will start and play around 5-10 seconds and then it restarts again.
On closer inspection it appears that the actual file itself has been corrupted - an extra 5-10 second copy of the intro of a track is tagged onto the start.
I am trying to work out a correlation between all the albums that have become corrupt and the only thing I can think of is they may have all been wma files before imported to itunes. However after re-ripping a couple of CD's to itunes to replace some of the corrupted files the problem has poped up another couple of times. This only appears to have happened to files where I have added the artwork myself. So I'm thinking something is happening when the files is edited/converted in itunes? Maybe the metadata I don't know.
Any light shed would be much appreciated I havn't found anyone with this problem! Running Windows 7 Pro btw.
Cheers,
Andy

I'm still getting the same issue, files are disappearing for no reason. Does anyone else have any experience with this?

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    <hr>
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    References
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    8) Chkdsk can be fixed by changing the hardware policy. (Credit: Bruce Finn)
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