Corrupted user account on Time Machine- recovered Snow Leopard

After changing the hard disk on my macbook and recovering my user account on afresh Snow Leopard installation, it seems the account got corrupted and now I can't repair permissions and some programs aren't working properly (Manga Studio can't export images, for example)...
Is there any way to fix this besides reinstalling everything and creating a new user (which would mean losing all my mail messages and keychain info)? Is there a proper way to backup (at least) the keychain info?

Carlos CD wrote:
I used the setup assistant, so there wasn't another user account when geting the old one from Time Machine
Rats.  I was hoping it was the other way, which we could probably fix fairly easily.
There are a couple of possibilities:
The backups might be corrupted.  You might want to try repairing them, per #A5 in Time Machine - Troubleshooting.
If that finds and fixes things, a full system restore (per #14 in Time Machine - Frequently Asked Questions) might solve the problems.
If not, why did you replace the HD?  If it was failing, it might have corrupted some things, and the damage got backed up.  So Setup Assistant would have brought the damage right back.  A possible fix for that would be to do a full system restore from the backups, but select an earlier one (Setup Assistant doesn't give you a choice -- it automatically uses the latest one).
Oh, and I'm really sorry if I'm a bit vague on the details: I'm an absolute noob!
Not a problem.  Nobody was born knowing all this stuff! 

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    Checking back in the backup drives, it was clear that Time Machine was the culprit - instances of those files in the backups were also locked. When did that happen? Looking back, it looks like it happened when I transferred the backups from one Time Machine drive to another. But it wasn't all at once - in the first backup on one drive, one of the Acknowledgement.rtf files was locked, and the other one wasn't, but in the second onwards, both were. It was clear that Time Machine seemed to be doing it to those files. Which files and why? I have no idea.
    So removing the uchg flag with "sudo chflags -R nouchg /" in terminal finally allowed me to apply the 10.6.7 combo update without failure.
    So were the troubles over then?
    Nope.
    While checking if everything was fine, I noticed iPhoto on the MB had all the thumbs missing - after rebuilding, they weren't back, and only a .plist trashing fixed it (I consider this pretty normal - probably looking for the files on the old UUID drive or something).
    But what gives? ALL the photos taken on the trip were gone! Not just the thumbs - the actual files were missing from the iPhoto Library! The data in the albums existed, just the actual files, just like my instance in Aperture on my own MBP.
    Checked the Time Machine - again, it was clear Time Machine had completely stuffed up - the files were nowhere to be found on the Time Machine drive.
    So currently, I've returned the original internal drive to the MacBook, performing a FRESH on new reformatted disk Time MAchine, and will use THAT to restore.
    Nightmares, indeed. It's several days of work doing all the restores, considering I have limited drives to work with. And yes, rest-assured, I was doing enough permission repairs, and PRAM resets to ensure they weren't issues.
    It occurs to me there are several faults with the most recent version of Time Machine (maybe 10.6.6 or something as that's when people had some of the issues above):
    1) At some point in time, Time Machine may not update a necessary Security package (and probably other files too - I believe the files around it were also not updated), meaning that if you use that Time Machine to restore, the outdated package will cause your computer to fail to boot.
    2) Transferring your backups to a new destination Time Machine drive may cause certain files to become user immutable or 'locked', with one consequence being you cannot update the OS.
    3) Time Machine may fail to backup image files with the Aperture or iPhoto Library. Trying to remember back, I *think* this may be related to the fact that we changed time zones, as the unupdated image files were after the zones were changed. Strangely, every other file within the Library packages were updated, as album data was updated - just not the actual image files and folders.
    Conclusion? I no longer trust Time Machine. The basic foundation of a backup service is that you trust it to do what it's supposed to do. After all this, how can I?
    You might think they are isolated incidents, but they were occurring on two Macs that I have, and they same errors can be found in others.I think I have detailed some root causes, but who really knows.
    At any rate you should keep an eye on at least these files I have detailed. Would love to hear Pondini on the matter, as I know he knows a lot about Time Machine.

    Someone has suggested just installing Snow Leopard on the machine. Will that work?
    If you can find a copy of the workstation version of Snow Leopard shipped with the same model of Mac mini, yes. Apple has not, to my knowledge, shipped a retail version of Snow Leopard new enough to boot your mini.
    I've also heard there is a way to install SL while connected to my old Powerbook in order to suck the entire old drive onto the new machine in an operable manner. Is this accurate, and can this be done if my old machine is the Powerbook on the old apple chip when the new machine is intel based
    No, it's not accurate. The OS on your PowerBook will not boot your mini.
    what are the differences between the single pack and the family pack?
    If you mean single and family pack of Mac OS X, the single pack is licensed for installation on one computer only, while the family pack is licensed for installation on up to five Macs.
    Regards.
    Message was edited by: Dave Sawyer

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