Creating PDFs from Word using Acrobat 9

I am trying to create a PDF using the 'convert to acrobat PDF' button from Word 2003. My PDF settings are set to embed the fonts. The resulting PDF has gaps in the text (bits where there is no text and should be). I have also tried going to File, Print and select PDF printer and the same problem occurs. Each time I try different bits of text are missing.
If I untick embed all fonts there is no problem.
I was using Acrobat CS and have used Acrobat CS3 and not had this problem.
Any help appreciated.

If you use ctrl-D>fonts, are all the fonts embedded. If not, are any of them non-standard fonts. The problem is typical of issues with fonts that are not embedded, sometimes due to license restrictions.

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